Backbone resonance assignment of N15, N30 and D10 T cell receptor β subunits
نویسندگان
چکیده
منابع مشابه
Statistical evaluation of NMR backbone resonance assignment
This paper proposes a novel statistical evaluation model for automated protein NMR sequential resonance assignment. It can be bound to any assignment program and provides confidences for the whole output assignment and each individual mapping. A simulation study on a set of four proteins shows that the statistical evaluation results are informative.
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Error tolerant backbone resonance assignment is the cornerstone of the NMR structure determination process. Although a variety of assignment approaches have been developed, none works sufficiently well on noisy fully automatically picked peaks to enable the subsequent automatic structure determination steps. We have designed an integer linear programming (ILP) based assignment system (IPASS) th...
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BCL6 is a transcriptional repressor. Two domains of the protein, the N-terminal BTB-POZ domain and the RD2 domain are responsible for recruitment of co-repressor molecules and histone deacetylases. The BTB-POZ domain is found in a large and diverse range of proteins that play important roles in development, homeostasis and neoplasia. Crystal structures of several BTB-POZ domains, including BCL6...
متن کاملA graph-based automated NMR backbone resonance sequential assignment.
The success in backbone resonance sequential assignment is fundamental to protein three dimensional structure determination via NMR spectroscopy. Such a sequential assignment can roughly be partitioned into three separate steps, which are grouping resonance peaks in multiple spectra into spin systems, chaining the resultant spin systems into strings, and assigning strings of spin systems to non...
متن کاملIPASS: Error Tolerant NMR Backbone Resonance Assignment by Linear Programming
The automation of the entire NMR protein structure determination process requires a superior error tolerant backbone resonance assignment method. Although a variety of assignment approaches have been developed, none works well on noisy automatically picked peaks. IPASS is proposed as a novel integer linear programming (ILP) based assignment method. In order to reduce size of the problem, IPASS ...
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ژورنال
عنوان ژورنال: Biomolecular NMR Assignments
سال: 2015
ISSN: 1874-2718,1874-270X
DOI: 10.1007/s12104-015-9632-0